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ElDorado Statistics for Pan troglodytes Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

Pan tro 3.0
NCBI build 3
NCBI build 3
NCBI build 3
NCBI build 3
NCBI build 3
NCBI build 2

# Contigs

44,449
24,129
24,129
24,129
24,129
24,129
26

# Basepairs

3,231,170,666
3,323,267,922
3,323,267,922
3,323,267,922
3,323,267,922
3,323,267,922
3,175,598,723

# Gene Loci

32,213
28,821
28,610
25,596
25,673
25,785
28,111

# Primary Transcripts

122,425
90,825
73,315
48,268
55,998
90,040
116,180
# gold
2,108
1,870
1,870
1,870
1,874
1,847
not available
# silver
48,901
30,889
22,889
15,550
18,187
19,449
27,227
# bronze
71,416
58,066
48,556
30,848
35,937
68,744
88,953

# Promoter Regions

108,379
97,825
94,848
82,961
84,649
86,178
91,125
# promoters associated with transcript
53,169
43,759
40,416
31,949
35,030
69,771
77,066
# promoters based on Comparative Genomics
55,210
54,066
54,432
51,012
49,619
16,407
14,059

# PromoterInspector Predictions

24,469
19,531
19,531
19,531
19,531
19,531
17,990

# Homology groups

19,556
19,197
18,838
18,671
19,699
20,217
19,532

# TSR

not available
not available
not available
not available
1,733
1,732
not available

# TSS

not available
not available
not available
not available
1,896
1,869
not available

# SNPs

1,600,567
1,566,504
1,566,504
1,516,234
1,514,399
1,514,398
1,469,284
# peptides affected by SNPs
25,106
17,525
13,952
7,036
8,752
11,276
15,477
# TF sites affected by SNPs
7,336,762
7,661,318
7,644,065
7,095,737
6,033,547
5,988,824
5,654,510

# Module matches in promoters

2,257,183
1,773,841
1,025,988
901,356
933,441
877,310
853,423

# SMARs

375,410
360,711
360,711
360,711
360,711
360,711
345,694

# Repeats

1,565,370
1,474,119
1,489,500
1,489,337
1,486,894
1,489,500
1,423,349
# ALU
1,093,447
1,041,931
1,045,206
1,045,206
1,044,181
1,045,206
1,000,024
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
403,870
367,126
379,011
379,011
377,506
379,011
360,475
# THE
68,053
65,062
65,283
65,120
65,207
65,283
62,850

# microRNAs

1,097
1,024
1,024
1,064
1,077
1,334
609
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
310,097
205,890
166,591
147,306
183,704
208,608
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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