Eldorado Statistics

ElDorado Statistics for Pan troglodytes Genome

	ElDorado 08-2011	ElDorado 12-2010	ElDorado 02-2010	ElDorado 07-2009
Genome Version	NCBI build 2	NCBI build 2	NCBI build 2	NCBI build 2
# Contigs	26	26	26	26
# Basepairs	3,175,598,723	3,175,598,723	3,175,598,723	3,175,598,723
# Gene Loci	28,111	27,988	27,869	27,867
# Primary Transcripts	116,180	107,332	107,031	105,895
# gold	not available	not available	not available	not available
# silver	27,227	27,157	27,169	27,082
# bronze	88,953	80,175	79,862	78,813
# Promoter Regions	91,125	82,397	82,445	80,577
# promoters associated with transcript	77,066	68,409	68,074	66,717
# promoters based on Comparative Genomics	14,059	13,988	14,371	13,860
# PromoterInspector Predictions	17,990	17,990	17,990	17,990
# Homology groups	19,532	19,144	19,289	19,766
# TSR	not available	not available	not available	not available
# TSS	not available	not available	not available	not available
# SNPs	1,469,284	1,424,301	1,424,517	1,424,517
# peptides affected by SNPs	15,477	14,357	14,372	14,293
# TF sites affected by SNPs	5,654,510	4,754,790	4,438,167	4,256,633
# Module matches in promoters	853,423	802,992	712,523	679,089
# SMARs	345,694	345,694	345,694	345,694
# Repeats	1,423,349	1,423,349	1,423,349	1,423,349
# ALU	1,000,024	1,000,024	1,000,024	1,000,024
# B1	not available	not available	not available	not available
# L1	360,475	360,475	360,475	360,475
# THE	62,850	62,850	62,850	62,850
# microRNAs	609	610	615	611
Matrix-Library	Version 8.4 (867 vertebrate matrices)	Version 8.3 (833 vertebrate matrices)	Version 8.2 (727 vertebrate matrices)	Version 8.1 (717 vertebrate matrices)
Module-Library	Version 5.5 (737 vertebrate modules)	Version 5.4 (714 vertebrate modules)	Version 5.3 (691 vertebrate modules)	Version 5.2 (656 vertebrate modules)