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ElDorado Statistics for Gallus gallus Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

Gallus gallus 5.0
Gallus gallus 5.0
NCBI build 3
NCBI build 3
NCBI build 3
NCBI build 3
NCBI build 2

# Contigs

23,475
23,475
15,932
15,932
15,932
15,932
32

# Basepairs

1,230,258,557
1,230,258,557
1,046,932,099
1,046,932,099
1,046,932,099
1,046,932,099
1,031,900,246

# Gene Loci

24,881
24,174
20,060
20,060
20,723
18,097
16,595

# Primary Transcripts

85,427
76,517
42,754
42,663
49,692
43,752
41,524
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
43,170
39,484
16,980
16,935
19,922
13,795
12,489
# bronze
42,257
37,033
25,774
25,728
29,770
29,957
29,035

# Promoter Regions

59,554
55,752
42,176
41,224
44,604
42,515
39,603
# promoters associated with transcript
44,523
40,329
26,769
26,776
30,392
33,783
32,058
# promoters based on Comparative Genomics
15,031
15,423
15,407
14,448
14,212
8,732
7,545

# PromoterInspector Predictions

31,219
31,219
16,641
16,641
16,641
16,641
13,582

# Homology groups

13,843
13,630
13,060
13,099
13,226
13,206
12,045

# TSR

not available
not available
not available
not available
not available
not available
not available

# TSS

not available
not available
not available
not available
not available
not available
not available

# SNPs

20,894,338
19,157,565
19,156,133
8,893,240
8,815,688
2,752,602
2,699,847
# peptides affected by SNPs
1,056,697
887,586
599,406
104,440
114,054
14,296
13,563
# TF sites affected by SNPs
91,786,400
89,612,797
89,466,758
38,288,319
31,938,429
9,996,217
9,498,439

# Module matches in promoters

1,322,615
1,207,010
452,601
439,263
477,591
406,398
334,602

# SMARs

61,270
61,270
53,115
53,115
53,115
53,115
52,426

# Repeats

not available
not available
not available
not available
not available
not available
not available
# ALU
not available
not available
not available
not available
not available
not available
not available
# B1
not available
not available
not available
not available
not available
not available
not available
# L1
not available
not available
not available
not available
not available
not available
not available
# THE
not available
not available
not available
not available
not available
not available
not available

# microRNAs

834
834
844
888
851
759
496
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
202,611
173,353
97,819
113,313
138,980
86,428
not available

Matrix-Library

Version 11.0
(1,121 vertebrate matrices)
Version 10.0
(1,099 vertebrate matrices)
Version 9.4
(1,091 vertebrate matrices)
Version 9.3
(1,076 vertebrate matrices)
Version 9.1
(932 vertebrate matrices)
Version 9.0
(907 vertebrate matrices)
Version 8.4
(867 vertebrate matrices)

Module-Library

Version 6.2
(906 vertebrate modules)
Version 6.1
(882 vertebrate modules)
Version 6.0
(864 vertebrate modules)
Version 5.9
(851 vertebrate modules)
Version 5.7
(817 vertebrate modules)
Version 5.6
(774 vertebrate modules)
Version 5.5
(737 vertebrate modules)

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