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ElDorado Statistics for Camponotus floridanus Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

UPenn 3.3
UPenn 3.3
UPenn 3.3
UPenn 3.3
UPenn 3.3
UPenn 3.3
UPenn 3.3

# Contigs

3,818
3,818
3,818
3,818
3,818
3,818
3,818

# Basepairs

229,824,240
229,824,240
229,824,240
229,824,240
229,824,240
229,824,240
229,824,240

# Gene Loci

16,055
16,055
16,055
16,055
16,056
15,773
15,773

# Primary Transcripts

17,354
17,354
17,354
17,354
17,356
16,357
16,357
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
17,354
17,354
17,354
17,354
17,356
16,357
16,357

# Promoter Regions

18,025
18,049
18,084
18,094
17,906
17,654
17,763
# promoters associated with transcript
16,201
16,203
16,234
16,238
16,239
15,916
15,914
# promoters based on Comparative Genomics
1,824
1,846
1,850
1,856
1,667
1,738
1,849

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

7,454
7,455
7,453
7,454
7,457
7,510
7,423

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

not available
not available
not available
not available
not available
not available
not available
# peptides affected by SNPs
not available
not available
not available
not available
not available
not available
not available
# TF sites affected by SNPs
not available
not available
not available
not available
not available
not available
not available

# Module matches in promoters

not available
not available
not available
not available
not available
not available
not available

# SMARs

not available
not available
not available
not available
not available
not available
not available

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

2
2
2
2
2
not available
not available
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
20,987
20,852
21,274
22,756
22,695
22,196
not available

Matrix-Library

Version 11.0
(92 insect matrices)
Version 10.0
(92 insect matrices)
Version 9.4
(92 insect matrices)
Version 9.3
(92 insect matrices)
Version 9.1
(91 insect matrices)
Version 9.0
(91 insect matrices)
Version 8.4
(91 insect matrices)

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