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ElDorado Statistics for Anopheles gambiae Genome

ElDorado 12-2017 ElDorado 12-2016 ElDorado 02-2016 ElDorado 06-2015 ElDorado 12-2013 ElDorado 12-2012 ElDorado 08-2011

Genome Version

AgamP4
AgamP4
AgamP4
AgamP4
AgamP3
AgamP3
NCBI build 2.2

# Contigs

8
8
8
8
8
8
6

# Basepairs

273,109,044
273,109,044
273,109,044
273,109,044
273,109,044
273,109,044
230,482,020

# Gene Loci

13,357
13,357
13,357
13,357
13,193
12,891
11,987

# Primary Transcripts

32,442
32,442
32,442
32,442
32,202
29,253
12,999
# gold
not available
not available
not available
not available
not available
not available
not available
# silver
not available
not available
not available
not available
not available
not available
not available
# bronze
32,442
32,442
32,442
32,442
32,202
29,253
12,999

# Promoter Regions

15,176
15,174
15,201
15,216
14,407
14,087
12,604
# promoters associated with transcript
14,949
14,951
14,976
14,980
14,193
13,864
12,418
# promoters based on Comparative Genomics
227
223
225
236
214
223
186

# PromoterInspector Predictions

not available
not available
not available
not available
not available
not available
not available

# Homology groups

5,110
5,120
5,123
5,117
5,529
5,575
5,396

# TSR

not available
not available
not available
not available
not available
not available
not available

# SNPs

1,982,261
1,112,955
1,112,955
1,137,265
1,137,169
1,157,959
1,016,952
# peptides affected by SNPs
95,330
95,330
95,330
56,876
55,835
58,370
4,569
# TF sites affected by SNPs
772,305
793,179
793,179
652,573
650,154
659,818
581,458

# Module matches in promoters

not available
not available
not available
not available
not available
not available
not available

# SMARs

not available
not available
not available
not available
not available
not available
not available

# Repeats

not available
not available
not available
not available
not available
not available
not available

# microRNAs

68
68
68
69
71
71
69
# Pfam families
(protein families, domains, motifs and repeats from the Pfam database)
53,684
52,267
52,980
61,404
59,167
58,054
not available

Matrix-Library

Version 11.0
(92 insect matrices)
Version 10.0
(92 insect matrices)
Version 9.4
(92 insect matrices)
Version 9.3
(92 insect matrices)
Version 9.1
(91 insect matrices)
Version 9.0
(91 insect matrices)
Version 8.4
(91 insect matrices)

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