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CAGE Tag Statistics


[FANTOM 5] [FANTOM 3]

For ElDorado 06-2015 CAGE tags are available for human and mouse, downloaded from the FANTOM 5 project.

human mouse
tissue # CAGE tags tissue # CAGE tags
achilles tendon 1,287,156 accessory axillary lymph node 5,321,817
adipose tissue 81,795,568 adrenal gland 42,076,859
adrenal gland 23,005,714 amnion 7,241,790
amnion 29,595,811 ANATOMICAL SYSTEM 28,897,412
amygdala 11,265,852 aorta 14,680,886
ANATOMICAL SYSTEM 105,894,981 blood 66,070,100
aorta 92,325,575 bone (os femoris) 17,647,920
artery 12,886,503 bone marrow 175,568,349
bile duct 15,897,815 brain 27,756,504
bladder 48,008,132 cecum 1,465,744
blood 972,766,873 cerebellum 16,229,519
bone 36,447,604 colon 8,215,142
bone marrow 59,375,512 corpora quadrigemina 7,882,164
brachiocephalic artery 20,818,740 corpus striatum 29,512,445
brain 132,426,264 cortex 31495450
breast 88,388,108 diencephalon 12,575,193
Buffy coat 17,284,938 epididymis 6,234,703
capillary 13,930,716 epididymis and seminiferous tubule 18,391,236
carotid artery 8,670,552 eyeball 71,186,892
cartilage 21,992,109 forelimb 32,242,256
caudate nucleus 11,603,420 gonad 4,530,299
cerebellum 35,142,953 heart 121,950,234
cerebral cortex 19,606,896 hippocampus 44,941,154
cerebrospinal fluid 3,177,873 ileum 75,610,297
cervix 102,932,643 intestinal mucosa 8,297,786
chorioamniotic membrane 4,321,011 intestine 84,191,117
chorion 17,700,906 kidney 73,883,777
choroid plexus 11,582,672 liver 150,757,052
colon 46,799,309 lung 92,225,781
connective tissue 7,523,315 mammary gland 20,868,162
coronary artery 10,602,246 medulla oblongata 17,398,297
corpus callosum 16,317,716 meninges 4,868,208
cruciate ligament 2,459,045 muscle (biceps femoris) 8,142,436
diaphragm 2,009,548 olfactory brain 3,410,077
diencephalon 5,257,821 organ of corti 17,032,877
duodenum 11,792,715 ovary 17,616,497
dura mater 17,438,967 oviduct 6,166,644
endometrium 24,464,402 pancreas 94,477,842
esophagus 41,496,860 peripheral nervous system 24,916,900
eye 113,634,103 Peyer's patch 15,863,992
eye - muscle inferior rectus 1,652,220 pituitary gland 44,587,676
eye - muscle lateral 1,394,817 placenta 13,919,179
eye - muscle medial 1,152,557 prostate 6,860,604
eye - muscle superior 1,707,839 raphe nuclei 17,933,939
eye - vitreous humor 957,589 skin 45,825,795
Fingernail (including nail plate, eponychium and hyponychium) 2,218,340 small intestine 25,639,840
frontal lobe 16,527,692 spinal cord 33,605,797
gall bladder 17,227,452 spleen 56,572,772
globus pallidus 11,796,556 stomach 75,561,879
gum 77,700,458 submandibular gland 8,988,856
hair follicle 13,453,898 substantia nigra 14,322,014
heart 123,173,745 testis 67,443,611
hippocampus 11,745,835 thymus 108,258,292
insula 17,573,745 tongue 6,861,592
internal thoracic artery 25,398,848 undefined tissue type 70,717,999
intestine 8,397,057 urinary bladder 6,145,209
kidney 152,847,833 uterus 14,396,620
left atrium 2,360,103 vagina 6,533,734
left ventricle 2,463,076 vesicular gland 7,867,085
liver 132,485,773 Visual cortex 33,025,367
locus coeruleus 18,895,081 whole body 332,004,335
lung 229,498,693
lymph node 34,252,549
medial frontal gyrus 11,954,584
medial temporal gyrus 20,615,432
mediastinum 9,555,063
medulla oblongata 31,478,732
meninges 27,311,580
mesothelium 95,724,358
nasal cavity 9,828,859
nasal septum 5,498,495
neck 7,844,828
nucleus accumbens 15,936,611
occipital cortex 10,112,394
occipital lobe 10,492,012
occipital pole 15,375,066
olfactory apparatus 7,771,192
omentum 24,747,063
optic nerve 1,408,086
ovary 117,288,386
palate 4,139,203
pancreas 57,743,753
paracentral gyrus 15,432,361
parietal lobe 27,567,351
parotid gland 17,911,287
pelvis 12,850,866
periodontal ligament 32,059,706
peripheral nervous system 40,162,737
pharynx 7,664,944
pineal gland 5,920,504
pituitary gland 7,969,462
placenta 36,450,573
pons 15,787,724
postcentral gyrus 15,644,076
prostate 103,357,388
pulmonary artery 21,311,815
putamen 8,149,580
rectum 5,427,113
retina 17,496,650
retroperitoneum 11,613,277
salivary gland 13,886,241
sinus 5,702,642
skeletal muscle 137,689,232
skeletal muscle - soleus muscle 3,785,392
skin 314,561,213
Skin - palm 827,021
small intestine 33,495,924
smooth muscle 4,542,434
soft tissue 471,941
spinal cord 67,173,373
spleen 26,580,264
stomach 69,240,906
subclavian artery 9,832,420
substantia nigra 9,740,643
synovium 25,804,334
temporal lobe 23,962,765
tendon 12,192,313
testis 62,100,428
thalamus 14,109,093
thorax 6,177,132
throat 4,911,129
thymus 31,771,351
thyroid 51,504,732
tongue 21,277,810
tongue epidermis (fungiform papillae) 1,184,462
tonsil 16,963,951
trachea 50,852,515
trophoblast 8,905,581
umbilical artery 19,883,547
umbilical cord 24,761,499
umbilical vein 42,620,285
undefined tissue type 600,515,993
urethra 4,268,557
uterus 45,181,013
vein 8,558,056
vulva 9,907,404


Up to ElDorado 12-2013 CAGE tags are available for human and mouse, downloaded from the FANTOM 3 project.

mouse human
tissue # CAGE tags tissue # CAGE tags
adipose 282,610 adipose 1,095,763
amnion 2,162 cecum 609,600
brain 200,511 cerebrum 1,232,245
cerebellum 229,794 epididymis 13,266
cerebral cortex 24,008 kidney 201,197
diencephalon 54,177 large intestine 814,029
embryo 1,162,640 liver 1,842,586
eye 3,663 mammary gland 10,352
heart 33,895 pancreas 243,485
hippocampus 3,149 prostate gland 23,931
liver 2,288,380 rectum 118066
lung 1,246,171 renal artery 36,618
macrophage 1,286,236 small intestine 199,832
mammary gland 16,189 stomach 3,874
medulla oblongata 7,449 undefined tissue type 1,586,121
muscle 40,351 ureter 32,827
placenta 2,079 urinary bladder 31,160
prostate gland 55,702 all 8,094,952
somatosensory cortex 186,534
striatal primordia 71,167
testis 130,641
undefined tissue type 396,621
visual cortex 208,009
all 7,932,138