Overview of Help-Pages
Overview of Genomatix Help Pages
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Genomatix Software Suite
Introduction
Project Management
General graphics features
Supply of DNA Sequences
DNA Sequence Formats
Scores
Evaluation Accounts
Release Notes
GePS: Genomatix Pathway System
Introduction
GePS access
Display components
GePS sidebar
Graphic display
GePS navigation bar
Network navigation bar
Network generation and extension
Data Sources
Release Notes
LitInspector: Genomatix Literature Analysis
Introduction
Background
Quality
Release Notes
MatInspector: Transcription Factor Binding Sites
Introduction
Matrix Information
MatInspector Algorithm
Library Statistics
Release Notes
MatBase: Transcription Factor Database
Introduction
Content Statistics
Content Release Notes
Release Notes
ElDorado: Genomes and Annotation
Introduction
Source of Elements
Genomatix Genome Browser
Annotation & Analysis
Transcript Information
Tissue Profiles
SNP Analysis
Annotated Sequence
Detailed Mapping
Alternative Transcripts
Transcriptome Viewer
Comparative Genomics
More Gene Info
Literature Analysis
Available Genomes
Release Notes
Gene2Promoter: Promoter Database
Introduction
Large Scale Promoter Extraction
Release Notes
GEMS Launcher: DNA Sequence Analysis and Patterns
Introduction
Main Menu
MatInspector
Search for common TF sites
Definition of Weight Matrices (MatDefine)
Weight Matrix
Transcription Factor <-> Matrix Assignment
SequenceShaper
SNPInspector
FastM
FrameWorker
CoreSearch
ModelInspector
Model Information
Search for phylogenetically conserved promoter models
SMARTest
DiAlign
DiAlign TF
ExonMapper
PromoterInspector
Primer Search
GeneRanker
Genomatix Sequence Tools
Genomatix List Comparison
Personal Matrix Library
Personal Model Library
Release Notes
RegionMiner: Next Generation Sequencing Data Analysis
Introduction
BED File Format
BAM File Format
BED File Toolbox
Complete Workflow for ChIPSeq Analysis
(only available on
GGA
)
Expression Analysis for RNASeq
(only available on
GGA
)
Clustering NGS Data
(only available on
GGA
)
NGSAnalyzer
MACS
SICER
Evaluation with Control Data
Annotation and Statistics
Overrepresented TFs
CNV Analysis
(only available on
GGA
)
microRNA Analysis
(only available on
GGA
)
Variant Analysis
Search for orthologous regions
Search for orthologous GeneIds
Distance correlation of sets (GenomeInspector)
Release Notes
ChipInspector
User Manual 2.x (pdf-file)
Release Notes
Tutorials
Video Tutorials
PDF Tutorials
FAQs
Frequently asked scientific questions
Frequently asked technical questions
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