General Statistics
Genomatix has developed ultra fast mapping methods and algorithms. Those were applied to map the sequence reads to the human genome (14,814,577 unique sequences, 20 base pairs each).
| Mapping tolerance |
mapped tags |
% |
ambiguous |
% |
not mappable |
% |
| perfect and unique match only |
9,949,911 |
67% |
|
|
|
|
| up to 3 point mutations and 2 insertions/deletions |
11,081,358 |
75% |
2,087,264 |
14% |
1,645,955 |
11% |
Mapping was performed on a standard 2GHz CPU with 4GB main memory and took less than 2 hours.
Genomic distribution
The data set contains 11,001,358 reads of 20bp length from Homo sapiens.
|
Tags |
Tag Density |
| |
#reads |
#reads/1,000 bp |
| Chr 1 |
972,254 |
3.93 |
| Chr 2 |
874,695 |
3.60 |
| Chr 3 |
691,498 |
3.47 |
| Chr 4 |
568,291 |
2.97 |
| Chr 5 |
597,404 |
3.30 |
| Chr 6 |
608,980 |
3.56 |
| Chr 7 |
571,205 |
3.60 |
| Chr 8 |
506,358 |
3.46 |
| Chr 9 |
462,980 |
3.30 |
| Chr 10 |
520,886 |
3.85 |
| Chr 11 |
557,985 |
4.15 |
| Chr 12 |
521,505 |
3.94 |
| Chr 13 |
313,490 |
2.75 |
| Chr 14 |
360,258 |
3.39 |
| Chr 15 |
333,082 |
3.32 |
| Chr 16 |
399,643 |
4.50 |
| Chr 17 |
482,313 |
6.12 |
| Chr 18 |
256,975 |
3.38 |
| Chr 19 |
417,322 |
6.54 |
| Chr 20 |
298,993 |
4.79 |
| Chr 21 |
147,959 |
3.15 |
| Chr 22 |
224,122 |
4.51 |
| Chr X |
384,105 |
2.48 |
| Chr Y |
9,055 |
0.16 |
|
 |
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